You are hereAll Publications / Kaikki Julkaisut

All Publications / Kaikki Julkaisut


  1. Schmeller DS, Weatherdon LV, Loyau A, Bondeau A, Brotons L, Brummitt N, Geijzendorffer IR, Haase P, Kuemmerlen M, Martin CS, Mihoub JB, Rocchini R, Saarenmaa H, Stoll S, Regan EC (2017) A suite of essential biodiversity variables for detecting critical biodiversity change. Biological Reviews doi: 10.1111/brv.12332
  2. Hugo W, Hobern D, Kõljalg U, Ó Tuama É, Saarenmaa H (2017) Global infrastructures for biodiversity data and services. In: The GEO Handbook on Biodiversity Observation Networks. Walters M, Scholes, RJ (Editors). Chapter 11. p. 259-291. Springer International Publishing. doi: 10.1007/978-3-319-27288-7
  3. Fetyukova Y, Tegelberg R, Karppinen J, Mononen T, Wu Z, Saarenmaa H (2017) Industrial methods for large scale digitization of biological collections in Finland. 136-137. In: Borovichev EA, Davydov DA, Koroleva NE (Editors) Abstracts of the International Conference The use of modern information technologies in botanical investigations. Apatity, Murmansk province, Russia, 28-31 March 2017. Russian Academy of Sciences, Kola Science Centre.
  4. Despot-Belmonte K, Neßhöver C, Saarenmaa H, Regan E, Meyer C, Martins E, Groom Q, Hoffmann A, Caine A, Bowles-Newark N, Bae H, Lange Canhos DA, Stenzel S, Bowler D, Schneider A, Weatherdon LV, Martin CS (2017) Biodiversity data provision and decision-making - addressing the challenges. Research Ideas and Outcomes 3: e12165. doi.org/10.3897/rio.3.e12165
  5. Hardisty AR, Bacall F, …, Fetyukova Y, …, Saarenmaa H, et al. (2016) BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology. BMC Ecology 16:49
  6. Smirnova L, Jacobsen K, Mergen P, Saarenmaa H, Hoffmann A (2016) The importance of capacity building for the development of integrated and interoperable biodiversity observation networks. GEO BON Open Science Conference & All Hands Meeting, 4th - 8th July 2016 / Leipzig, Germany. Abstract Book p. 138-139. conf2016.geobon.org/Downloads/PDF/GEOBON_Abstract_Book_OSC2016.pdf
  7. Fetyukova Y, Saarenmaa H (2016) Prototyping the Essential Biodiversity Variables for species populations - An analysis of trends in relative abundance for all European butterflies using big data from GBIF. GEO BON Open Science Conference & All Hands Meeting, 4th - 8th July 2016 / Leipzig, Germany. Abstract Book p. 37-38. conf2016.geobon.org/Downloads/PDF/GEOBON_Abstract_Book_OSC2016.pdf
  8. Smirnova L, Mergen P, Groom Q, De Wever A, Penev L, Stoev P, Pe’er I, Runnel V, Garcia Camacho A, Vincent T, Agosti D, Arvanitidis C, Bonet F, Saarenmaa H (2016) Data sharing tools adopted by the European Biodiversity Observation Network Project. Research Ideas and Outcomes 2: e9390.
  9. Saarenmaa H, Karppinen J, Tegelberg R, Wu Z (2016) World’s first automated mass digitization line for pinned insects. XXV International Congress of Entomology, Orlando, Florida, USA, September 25-30, 2016. Entomological Society of America.
  10. Tegelberg R, Karppinen J, Wu Z, Kahanpää J, Saarenmaa H (2016) Automating insect digitization - speed and costs. 31st Annual Meeting of the Society for the Preservation of Natural History Collections. June 20-25, 2016, Berlin, Germany. Abstracts, p. 179-180. Museum für Naturkunde.
  11. Tegelberg R (2016) Luonnontieteellisten kokoelmien digitointi. Luonnon Tutkija 120(2): 64-70.
  12. de Jong Y, Kouwenberg J, Boumans L, Hussey C, Hyam R, Nicolson N, Kirk P, Paton A, ..., Saarenmaa H, Ulenberg S (2015) PESI - a taxonomic backbone for Europe. Biodiversity Data Journal 3: e5848, 1-51. doi: 10.3897/BDJ.3.e5848 Pensoft.
  13. Wetzel FT, Saarenmaa H, Regan E, Martin CS, Mergen P, Smirnova L, Ó Tuama É, García Camacho FA, Hoffmann A, Vohland K, Häuser CL (2015) The roles and contributions of Biodiversity Observation Networks (BONs) in better tracking progress to 2020 biodiversity targets: a European case study. Biodiversity. DOI: 10.1080/14888386.2015.1075902 Taylor & Francis.
  14. Tegelberg R, Karppinen J, Mononen T, Sääskilahti M, Saarenmaa H (2014) Automated mass-digitization line for individual insect specimens Society for the Preservation of Natural History Collections, 29th Annual Meeting, Cardiff, Wales, 22-27 June 2014. Programme and Abstracts, p. 43.
  15. Mononen T, Tegelberg R, Sääskilahti M, Tähtinen M, Huttunen MA, Saarenmaa H (2014) DigiWeb - a workflow environment for quality assurance of transcribing in digitization of natural history collections. Biodiversity Informatics 9: 18-29.
  16. Mononen T, Tegelberg R, Sääskilahti M, Huttunen MA, Tähtinen M, Saarenmaa H (2014) DigiWeb - quality driven workflow environment for digitisation of natural history specimens. TDWG 2014 Annual Conference, Jönköping, Sweden, 27-31 October 2014. Applications and Data Standards for Sustaining Biodiversity.
  17. Smirnova L, Jacobsen K, Mergen P, Theeten F, Saarenmaa H (2014) Helpdesk and training facilities at the Royal Museum for Central Africa, now EU BON oriented. TDWG 2014 Annual Conference, Jönköping, Sweden, 27-31 October 2014. Applications and Data Standards for Sustaining Biodiversity.
  18. Tegelberg R, Mononen T, Saarenmaa H (2014) High-performance digitization of natural history collections: Automated imaging lines for herbarium and insect specimens. Taxon 63 (6) 1307-1313.
  19. Saarenmaa H, Mononen T, Karppinen J, Sääskilahti M, Tegelberg R (2014) High-performance individual-based digitisation of insect collections. Digital Specimen 2014, September 8 - 12, 2014, Berlin, Germany. Mallison H, Vogel J, Belvedere M (Editors) Abstracts of Presentations, p. 68. Museum für Naturkunde, Berlin.
  20. Laurenne N, Tuominen J, Saarenmaa H, Hyvönen E (2014) Making species checklists understandable to machines - a shift from relational databases to ontologies. Journal of Biomedical Semantics 5: 40.
  21. Mononen T, Tegelberg R, Karppinen J, Sääskilahti M, Saarenmaa H, Koskinen T, Muona J (2014) Optical character recognition (OCR) in linking entomological labels with field notebook data. TDWG 2014 Annual Conference, Jönköping, Sweden, 27-31 October 2014. Applications and Data Standards for Sustaining Biodiversity.
  22. Tegelberg R, Mononen T, Pajari M, Saarenmaa H. (2013) Automated mass-digitization of natural history collections. 10th Finnish Plant Science Days, p. 35, 13th-15th May, University of Helsinki, Finland. Abstracts.
  23. Saarenmaa H, Mononen T, Karppinen J, Sääskilahti M, Tegelberg R (2013) Building a mass-digitisation service infrastructure and user communities. TDWG Biodiversity Information Standards annual conference 27 October -1 November 2013, Florence, Italy. Abstracts.
  24. Saarenmaa H, Schmidt J, Hugo W. (2013) Development of extended content standards for biodiversity data. European Geosciences Union (EGU) General Assembly 2013, Vienna, 8-12 April 2013. Geophysical Research Abstracts, Vol. 15, EGU2013-6968, 2013.
  25. Saarenmaa, H. (2013) How much of the legacy collections can be digitised? Chapter 22. In: Hardisty A, Roberts D, The Biodiversity Informatics Community. A decadal view of biodiversity informatics: challenges and priorities. BMC Ecology 2013, 13:16 doi:10.1186/1472-6785-13-16
  26. Hoffmann A, Penner J, Vohland K, Cramer W, Doubleday R, Henle K, Kõljalg U, Kühn I, Kunin W, Negro JJ, Penev L, Rodríguez C, Saarenmaa H, Schmeller D, Stoev P, Sutherland W, Ó Tuama É, Wetzel F, Häuser CL (2013) Improved access to integrated biodiversity data for science, practice, and policy - the European Biodiversity Observation Network (EU BON). Nature Conservation 6 : 49-65.
  27. Mononen T, Pignolet J, Sajid M, Karppinen J, Hiltunen J, Tegelberg R, Saarenmaa H (2012) An automated mass-digitisation infrastructure for natural history collections. Towards an International Infrastructure for Biodiversity Information. TDWG Conference. Beijing, 22-26 October 2012. Abstracts. Chinese Academy of Sciences.
  28. Saarenmaa H (2012) Biodiversity Virtual e-Laboratory (BioVeL) as user of earth observation products. GEO European Projects Workshop (GEPW-6), Rome, Italy, 7-8 May (2012) European Commission and the Group on Earth Observations.
  29. Bourlat S, Donvito G, Giddy J, De Giovanni R, Goble C, Güntsch A, Haines R, Hardisty A, Hernandez-Ernst V, Horváth F, de Jong Y, Kottmann R, Mathew C, Morrison N, Obst M, Oostermeijer G, Paymal E, Saarenmaa H, Vicario S, Williams AR (2012) BioVeL – Developing a Biodiversity Virtual e-Laboratory. Towards an International Infrastructure for Biodiversity Information. TDWG Conference. Beijing, 22-26 Ocober 2012. Abstracts. Chinese Academy of Sciences.
  30. Scholes RJ, Walters M, Turak E, Saarenmaa H, Heip CHR, Ó Tuama É, Faith DP, Mooney HA, Ferrier S, Jongman RHG, Harrison IJ, Yahara T, Pereira HM, Larigauderie A, Geller G (2012) Building a global observing system for biodiversity. Current Opinion in Environmental Sustainability 4: 139-146. Elsevier.
  31. Saarenmaa H, Tegelberg R, Pajari M, Mononen T, Hyvönen T, Shah M, Haapala J (2012) Building a service centre for outsourcing large-scale digitisation. SPNHC 2012, the 27th Annual Meeting of the Society for the Preservation of Natural History Collections. June 11-16, 2012, New Haven, Connecticut, USA. In: Sweeney, P. (Editor) Emerging Technology and Innovation in Natural History Collections Management. Abstracts, p 78. Yale University, New Haven.
  32. Tegelberg R, Haapala J, Mononen T, Pajari M, Saarenmaa H (2012) The development of a digitising service centre for natural history collections. Blagoderov, V. & Smith, V. (Editors). No specimen left behind: mass digitization of natural history collections. ZooKeys 209: 75-86.
  33. Lehtonen J, Heiska S, Pajari M, Tegelberg R, Saarenmaa H (2011) Digitarium's digitisation process used for natural history collection specimens Abstracts of the TDWG 2011 Annual Conference, October 16, 2011 - October 21, 2011, New Orleans, Louisiana, USA.
  34. Laurenne N, Tuominen J, Mertaniemi A, Saarenmaa H, Hyvönen E (2011) LSID versus HTTP URI: Two approaches and e-infrastructures for managing information about taxon names. Jones, M.B. & Gries, C. (editors) Proceedings of the Environmental Information Management Conference 2011 (EIM 2011). September 28-29, 2011. Santa Barbara, CA. p. 168. University of California.
  35. Lehtonen J, Heiska S, Pajari M, Tegelberg R, Saarenmaa H (2011) The process of digitising natural history collection specimens at Digitarium. Jones, M.B. & Gries, C. Eeditors) Proceedings of the Environmental Information Management Conference 2011 (EIM 2011). September 28-29, 2011, Santa Barbara, CA. 87-91. University of California.
  36. Saarenmaa H, Ó Tuama É, van den Berghe E, Bertrand N, Canhos D, Cotter G, Chun S, Jones M, Khalikov R, Lane M, Los W, Michener W, Nativi S, Schildhauer M, Scott L, Ticsay-Ruscoe M, de la Torre J, Vergara S (2010) Data integration and interoperability. In: Geller, G. (editor) Group on Earth Observations Biodiversity Observation Network (GEO BON), Detailed Implementation Plan. 173 p. Chapter 8. Pp. 148-162. Group on Earth Observations, Geneva.
  37. Koivula H, Heikkinen M, Lahti T, Saarenmaa H (2010) Enterprise architecture for managing biodiversity data in Finland. TDWG 2010 Conference, 26 September - 1 October, 2010, Woods Hole, MA, USA. Weitzman, A. & Belbin, L. (Editors). Proceedings of TDWG 2010 Conference. Biodiversity Information Standards (TDWG) and the Missouri Botanical Garden, St. Louis.
  38. Saarenmaa H, Heiska S, Lehtonen J (2010) Luonnon monimuotoisuutta kuvaavan tiedon yhteiskäyttö, biodiversiteetti-informatiikka ja makroekologia. Luonnon monimuotoisuus ja metsien kestävä käyttö. Metsätieteen päivä 2010, Helsinki, 4.11.(2010) Suomen Metsätieteellinen Seura, Helsinki.
  39. Saarenmaa H, Oguya F (2010) North-south data sharing using the e-Infrastructure of the Global Biodiversity Information Facility (GBIF) 2010 Euro-Africa Conference on e-Infrastructures, Helsinki, Finland, 9-10 December 2010. Sigma Orioinis, Paris.
  40. Ó Tuama É, Saarenmaa H, Nativi S, Bertrand N, van den Berghe E, Scott L, Lane M, Cotter G, Canhos D, Khalikov R (2010) Principles of the GEO BON information architecture. 42 p. Group on Earth Observations, Geneva.
  41. Nativi S, Mazzetti P, Saarenmaa H, Kerr J, Ó Tuama É (2009) Biodiversity and climate change use scenarios framework for the GEOSS interoperability pilot process. Ecological Informatics 4: 23-33. Elsevier.
  42. Koskinen T, Wäli P, Ampuja P, Saarenmaa H (2009) Digitization of entomological scratchpads and field journals. Drupal 6. Finnish Museum of Natural History, Helsinki. http://digit.luomus.fi/
  43. Saarenmaa H, & al (2009) Industrialising digitisation in Finland. GBIF Governing Board and Nodes Annual Meeting, 3-8 October 2009, Copenhagen, Denmark.
  44. Saarenmaa H (2009) Koordinaattien käyttö uudistuu. Baptria 1/2009: 5-6. Suomen Perhostutkijain Seura ry.
  45. Pelkonen V-P, Saarenmaa H, Laurenne N (toim.) (2009) Luonnontieteellisten museokokoelmien digitointi. Strategia ja toimintasuunnitelma 2010-2015. 47 s. Luonnontieteellinen keskusmuseo.